In this paper we investigate from the numerical point of view the discrete DNA model proposed in Lacitignola and Saccomandi (Bull. Math. Biol., 2014) in order to test the robustness of the parametric resonance condition found in the limit of the continuum approximation. To describe more realistically the binding of RNA polymerase to the DNA macromolecule during the first stage of the transcription process, we here consider a localized DNA-RNA polymerase interaction and a relatively high number of base-pairs. Even with these more realistic assumptions, our findings confirm the ones found in the continuum limit and indicate that the parametric resonance phenomenon can be an intrinsic property of the discrete DNA model.
Parametric resonance in a mesoscopic discrete DNA model
LACITIGNOLA, Deborah;
2014-01-01
Abstract
In this paper we investigate from the numerical point of view the discrete DNA model proposed in Lacitignola and Saccomandi (Bull. Math. Biol., 2014) in order to test the robustness of the parametric resonance condition found in the limit of the continuum approximation. To describe more realistically the binding of RNA polymerase to the DNA macromolecule during the first stage of the transcription process, we here consider a localized DNA-RNA polymerase interaction and a relatively high number of base-pairs. Even with these more realistic assumptions, our findings confirm the ones found in the continuum limit and indicate that the parametric resonance phenomenon can be an intrinsic property of the discrete DNA model.I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.
